Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFEPGHLHLVSLPGLDQQDINIHIRYEVRQNAESGAYVHFDMDGEIDGKPFSDSFELPRDTAFNFASDATRVAQKHGLHPKFGAITRVHKEYDAMFEDIRAKLHAHPGEPVDLERIIRHE
2K4V Chain:A ((4-123))
MFEPGHLHLVSLPGLDQQDINIHIRYEVRQNAESGAYVHFDMDGEIDGKPFSDSFELPRDTAFNFASDATRVAQKHGLHPKFGAITRVHKEYDAMFEDIRAKLHAHPGEPVDLERIIRHE
General information:
TITO was launched using:
RESULT:
Template:
2K4V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44964 for 740 contacts (-60.8/contact) +
2D Compatibility (PS) -12598 + (NN) -2550 + (LL) 0
1D Compatibility (HY) -14400 + (ID) 6000
Total energy: -80512.0 ( -108.80 by residue)
QMean score : 0.642
(partial model without unconserved sides chains):
PDB file :
Tito_2K4V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K4V-query.scw
PDB file :
Tito_Scwrl_2K4V.pdb
: