Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASAKLSRMVCLLCGFFSTGISMASSLILLSASDLAGQWTLQQDEAPAICHLELRDSEVAEASGYDLGGDTACLTRWLPSEPRAWRPTPAGIALLERGGLTLMLLGRQGEGDYRVQKGDGGQLVLRRATP
1JIW Chain:I ((1-105))
-------------------------SSLILLSASDLAGQWTLQQDEAPAICHLELRDSEVAEASGYDLGGDTACLTRWLPSEPRAWRPTPAGIALLERGGLTLMLLGRQGEGDYRVQKGDGGQLVLRRAT-
General information:
TITO was launched using:
RESULT:
Template:
1JIW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58055 for 745 contacts (-77.9/contact) +
2D Compatibility (PS) -10723 + (NN) -3534 + (LL) 1948
1D Compatibility (HY) -12800 + (ID) 5250
Total energy: -88414.0 ( -118.68 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_1JIW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JIW-query.scw
PDB file :
Tito_Scwrl_1JIW.pdb
: