Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTDFQQYFDESHQLIRDSVRRFVEREVLPYIDEWEEAEEFPRELYLKAGAAGILGIGYPEAYGGSCEGDLFAKVAASEELMRCGS-GGLVAGLGSLDIGLPPVVKWARPEVRERVVPAVLRGEKIMALAVTEPSGGSDVANLKTRAVRDGDHYRVSGSKTFITSGVRADYYTVAVRTGGEGFAGISLLLVEKGTAGFSVGRKLKKMGWWASDTAELFFDDCRVPAENLIGVENAGFACIMANFQSERLALAVMANMTAQLALEESLRWAREREAFGKPIGKFQVLRHRLAEMATQLEVSREFTYRQAAKMAAGKS-VIKEISMAKNFATDVADRLTYDAVQVLGGMGYMRESLVERLYRDNRILSIGGGSREIMNEIIGKQMGL |
| 3P4T Chain:A ((31-401)) | ------------EALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGG-DGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTGGPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVARVYTRHVVERQLAGETNLIAEVCFAKNTAVEAGEWVANQAVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTLGF |
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General information:
TITO was launched using:
| RESULT:
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Template: 3P4T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -197128 for 3282 contacts (-60.1/contact) +
2D Compatibility (PS) -40688 + (NN) -22109 + (LL) 652
1D Compatibility (HY) -20400 + (ID) 9150
Total energy: -288823.0 ( -88.00 by residue)
QMean score : 0.563
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