Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLWRQTPDLEQLNASQKNSIGDLLGIRFEAFDDESLTASMPVDSRTHQPFGLLHGGASVVLAESLGSMASYLCVDTSQYYCVGLEVNANHLRGLRSGRVTAVARAIHLGRTTHVWDIRLSGDDGKPSCIARLTMAVVPLAGRAG
4QD8 Chain:F ((2-140))
-SLWRQTPDLEQLNASQKNSIGDLLGIRFEAFDDESLTASMPVDSRTHQPFGLLHGGASVVLAESLGSMASYLCVDTSQYYCVGLEVNANHLRGLRSGRVTAVARAIHLGRTTHVWDIRLSGDDGKPSCIARLTMAVVPL-----
General information:
TITO was launched using:
RESULT:
Template:
4QD8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98072 for 1077 contacts (-91.1/contact) +
2D Compatibility (PS) -14817 + (NN) -6102 + (LL) 252
1D Compatibility (HY) -19200 + (ID) 6950
Total energy: -144889.0 ( -134.53 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_4QD8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QD8-query.scw
PDB file :
Tito_Scwrl_4QD8.pdb
: