Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKLLSGQVALVTGGAAGIGRATALAFAAAGVKVVVADLDSAGGEGTVEAIRQAG--GEALFIRCDVTRDAEVKALVEGCAAAYGRLDYAFNNAGIEIEQGKLADGNEAEFDAIMAVNVKGVWLCMKHQIPLMLAQGGGAIVNTASVAGLGAAPKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEA----DPRKA--EFAAAMHPLGRVGRVEEIAAAVLYLCCDNAGFTTGIALPVDGGATAI
1IY8 Chain:E ((11-265))
----FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEF-IQVNPSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQSAA
General information:
TITO was launched using:
RESULT:
Template:
1IY8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -185327 for 2194 contacts (-84.5/contact) +
2D Compatibility (PS) -27209 + (NN) -11267 + (LL) 564
1D Compatibility (HY) -15600 + (ID) 5100
Total energy: -243939.0 ( -111.18 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_1IY8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IY8-query.scw
PDB file :
Tito_Scwrl_1IY8.pdb
: