Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHYVTPDLCDAYPELVQVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGGVTFRPGEFVYADNNGIIVSPQALKMPE
3C8O Chain:B ((1-161))
MHYVTPDLCDAYPELVQVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGGVTFRPGEFVYADNNGIIVSPQALKMP-
General information:
TITO was launched using:
RESULT:
Template:
3C8O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124754 for 1416 contacts (-88.1/contact) +
2D Compatibility (PS) -18385 + (NN) -12005 + (LL) 104
1D Compatibility (HY) -24000 + (ID) 8050
Total energy: -187090.0 ( -132.13 by residue)
QMean score : 0.620
(partial model without unconserved sides chains):
PDB file :
Tito_3C8O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C8O-query.scw
PDB file :
Tito_Scwrl_3C8O.pdb
: