Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGRSSRKDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQYAALLEAGFARARSAEETVRLLVTSYIDWVVANPDWARFILHSRGRVEAGELGERLRADNQAHFARIHAALAGYRAEGLFR-EMPDDCFASVVIGPAHDLARQWLAGRTRVALADCRELLAQVAWDSVRAA
1VI0 Chain:A ((8-195))
----PKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIKEKATAKEKLALVISKHFSLLAGDHNLAIVTQLE-LRQSNLELRQKINEILKGYLNILDGILTEGIQSGEIKEGLDVRLARQMIFGTIDETVTTWVMNDQKYDLVALSNSVLELLVSGIHNK
General information:
TITO was launched using:
RESULT:
Template:
1VI0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110986 for 1352 contacts (-82.1/contact) +
2D Compatibility (PS) -20489 + (NN) -8967 + (LL) 208
1D Compatibility (HY) -13200 + (ID) 1500
Total energy: -154934.0 ( -114.60 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_1VI0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VI0-query.scw
PDB file :
Tito_Scwrl_1VI0.pdb
: