Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS
4F4M Chain:A ((3-149))
--SLDQCIVNACKNSWDKSYLAGTPNKDNASGFVQSVAAELGVPMPRGNANAMVDGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCS-----
General information:
TITO was launched using:
RESULT:
Template:
4F4M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106943 for 1263 contacts (-84.7/contact) +
2D Compatibility (PS) -15859 + (NN) -4173 + (LL) 384
1D Compatibility (HY) -19200 + (ID) 7300
Total energy: -153091.0 ( -121.21 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_4F4M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F4M-query.scw
PDB file :
Tito_Scwrl_4F4M.pdb
: