Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLAGSFAALFLSLSAQAADCTFTQLEIVPQFGSPNMFGGEDEHVRVMFSNEDPNDDNPDAFPEPPVYLADRDSGNDCRIEDGGIWSRGGVFLSQDGRRVLMHEFSGSSAELVSYDSATCKVVHREDISGQRWAVDKDGLRLGQKCSGESVDSCAKIVKRSLAPFCQTAKK
4EQA Chain:C ((20-169))
-------------------ADCTFTQLEIVPQFGSPNMFGGEDEHVRVMFSNEDPNDDNPDAFPEPPVYLADRDSGNDCRIEDGGIWSRGGVFLSQDGRRVLMHEFSGSSAELVSYDSATCKVVHREDISGQRWAVDKDGLRLGQKCSGESVDSCAKIVKRSLAPFCQT---
General information:
TITO was launched using:
RESULT:
Template:
4EQA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73613 for 1101 contacts (-66.9/contact) +
2D Compatibility (PS) -16175 + (NN) -11769 + (LL) 2272
1D Compatibility (HY) -18400 + (ID) 7500
Total energy: -125185.0 ( -113.70 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_4EQA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EQA-query.scw
PDB file :
Tito_Scwrl_4EQA.pdb
: