Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGIPEITAYPLPTAQQLPANLARWSLEPRRAVLLVHDMQRYFLRPLPESLRAGLVANAARLRRWCVEQGVQIAYTAQPGSMTEEQRGLLKDFWGPGMRASPADREVVEELAPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAASRCAMVVTTDEVLE
1NF9 Chain:A ((1-207))
MSGIPEITAYPLPTAQQLPANLARWSLEPRRAVLLVHDMQRYFLRPLPESLRAGLVANAARLRRWCVEQGVQIAYTAQPGSMTEEQRGLLKDFWGPGMRASPADREVVEELAPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAASRCAMVVTTDEVLE
General information:
TITO was launched using:
RESULT:
Template:
1NF9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172775 for 1744 contacts (-99.1/contact) +
2D Compatibility (PS) -22265 + (NN) -15363 + (LL) 0
1D Compatibility (HY) -29600 + (ID) 10350
Total energy: -250353.0 ( -143.55 by residue)
QMean score : 0.787
(partial model without unconserved sides chains):
PDB file :
Tito_1NF9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NF9-query.scw
PDB file :
Tito_Scwrl_1NF9.pdb
: