Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNAMALTLAGLLAAPSLGFAAAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGASVEGDAIFASEDDAVYGASLVRLSDRCK
3NRF Chain:B ((3-105))
----------------------APDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGASVEGDAIFASEDDAVYGASLVRLSDRC-
General information:
TITO was launched using:
RESULT:
Template:
3NRF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50675 for 695 contacts (-72.9/contact) +
2D Compatibility (PS) -11000 + (NN) -2000 + (LL) 2024
1D Compatibility (HY) -12000 + (ID) 5150
Total energy: -78801.0 ( -113.38 by residue)
QMean score : 0.750
(partial model without unconserved sides chains):
PDB file :
Tito_3NRF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NRF-query.scw
PDB file :
Tito_Scwrl_3NRF.pdb
: