Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MKFLLIGLIR---FYQYAISPLIGPRC----RFYPSCSHYTLEAIRVHGALRGGYLGARRLLRCHPWHPGGYDPVPERQEQACACHRTAKPGK-
1XMA Chain:A ((35-137))
SDVIRGYVDTIILSLLIEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETKRRTYYRITPEGIKYYKQKCEEWELTKKVINKFVK
General information:
TITO was launched using:
RESULT:
Template:
1XMA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54000 for 524 contacts (-103.1/contact) +
2D Compatibility (PS) -8698 + (NN) 3990 + (LL) 0
1D Compatibility (HY) -2400 + (ID) 550
Total energy: -61658.0 ( -117.67 by residue)
QMean score : 0.178
(partial model without unconserved sides chains):
PDB file :
Tito_1XMA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XMA-query.scw
PDB file :
Tito_Scwrl_1XMA.pdb
: