Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAYLSDQPVRLSPLRDEQGNQPRFGLLLEPGRPGMHVGELPAQWLKGLARSHHLLLLRGFAAFADAESLTRYCHDFGEVMLWPFGAVLELVEQEGAEDHIFANNYVPLHWDGMYLETVPEFQVFHCVDAPGDSDGGRTTFSSTPAALQLADSSELELWRRASGRYQRSAAHYSSRSAAPIVERHPRREFPILRFCEPPVEGDASFINPSEFHYDGIAPEQRGELLASLRRCLYHPQAHYAHRWRSDDLVIADNLTLLHGREAFAHRAPRHLRRVHIHAEPALRNPHLQRD
4YLM Chain:X ((3-292))
MNAYLSDQPVRLSPLRDEQGNQPRFGLLLEPGRPGMHVGELPAQWLKGLARSHHLLLLRGFAAFADAESLTRYCHDFGEVMLWPFGAVLELVEQEGAE-HIFANNYVPLHWDGMYLETVPEFQVFHCVDAPGDSDGGRTTFSSTPAALQLADSSELELWRRASGRYQR-----SSRSAAPIVERHPRREFPILRFCEPP------------FHYDGIAPEQRGELLASLRRCLYHPQAHYAHRWRSDDLVIADNLTLLHGREAFAHRAPRHLRRVHIHAEPALRNPHLQR-
General information:
TITO was launched using:
RESULT:
Template:
4YLM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147443 for 2141 contacts (-68.9/contact) +
2D Compatibility (PS) -28677 + (NN) -15203 + (LL) 600
1D Compatibility (HY) -34800 + (ID) 13600
Total energy: -239123.0 ( -111.69 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_4YLM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YLM-query.scw
PDB file :
Tito_Scwrl_4YLM.pdb
: