Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTERKRWLAGCLSALLSLPLAAAVPGPDAPADLARGKAMAQKMCSRCHDDDGNGGPRPNRSYPKLAGLDREYLYKQIYDLKTQRRR---------NPATNGRGEELSAADVVNVSAWFAAQRMSAGEQTLADPRQRERGRQLFENGLAQRGVPPCVTCHGPAAQGLAALKAPRLAGQWAEYLATQLHGFRDGKRG---NSATMRAVAGGLEDSHIQALAGYLGSLGP
1M70 Chain:A ((2-190))
------------------------------GDAEAGQGKV-AVCGACHGVDGNSP---APNFPKLAGQGERYLLKQLQDIKAGSTPGAPEGVGRKVLEMTGMLDPLSDQDLEDIAAYFSSQKGSVGY---ADPALAKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLAGFPKLGGQHAAYTAKQLTDFREGNRTNDGDTMIMRGVAAKLSNKDIEALSSYIQGLH-
General information:
TITO was launched using:
RESULT:
Template:
1M70.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33558 for 1383 contacts (-24.3/contact) +
2D Compatibility (PS) -19151 + (NN) -13530 + (LL) 2064
1D Compatibility (HY) -8000 + (ID) 3250
Total energy: -75425.0 ( -54.54 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_1M70.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M70-query.scw
PDB file :
Tito_Scwrl_1M70.pdb
: