Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVAERLCATPCGPVIEFAGIDLSLGGSRILDGVRLRVEAGSVHALVGPNGGGKSSLVKTLLGQM-PHRGELRLEWPGAPGCIGYVPQALEFDRGL---------PLTVDDFMAAMCQRRPAFLGLSRSRRPAIDAALERVGMLAKRGRRMGALSGGERQRVLLAQGLV------PPPQLLVLDEPMSALDEGGIQVFERLLLDW-RQAGVTVLWIEHDLEAVGRLADRVSGLNRHLLFDGPAASSLTPERLLTLFSTQPRKNAEASR
4G1U Chain:C ((5-237))
-------AVTPVA-LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLL---GQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVI----QMGRAPYGGSQDRQ-ALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIM-----LLAQGKLVACGTPEEVLN--------------
General information:
TITO was launched using:
RESULT:
Template:
4G1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121111 for 1658 contacts (-73.0/contact) +
2D Compatibility (PS) -23320 + (NN) -5505 + (LL) 2020
1D Compatibility (HY) -15600 + (ID) 3900
Total energy: -167416.0 ( -100.97 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_4G1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G1U-query.scw
PDB file :
Tito_Scwrl_4G1U.pdb
: