Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVCAAFSGGAGASDAGALLEAARRGDTAQVASLLERKVEVDAPSADGSTPLLLATANDHLAVARQLIEAGADVNRQNSRLDSPYLLAGAEGRLEILRLTLLHGADLKSTNRYGGTALIPACERGHVEVVKTLLQAGVDPNHVNKLGWTGLLEAILLSDGGPRHQEIVRLLIDAGADVNLADADGVSPLAHARQRGQGGIERLLLAAGAQ
1N11 Chain:A ((148-339))
----------------TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE-----GHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA-
General information:
TITO was launched using:
RESULT:
Template:
1N11.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94458 for 1686 contacts (-56.0/contact) +
2D Compatibility (PS) -21328 + (NN) -16748 + (LL) 368
1D Compatibility (HY) -2800 + (ID) 2600
Total energy: -137566.0 ( -81.59 by residue)
QMean score : 0.716
(partial model without unconserved sides chains):
PDB file :
Tito_1N11.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N11-query.scw
PDB file :
Tito_Scwrl_1N11.pdb
: