Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVVVTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALMIANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS
4IF4 Chain:C ((2-207))
-IKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEV---LVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI----
General information:
TITO was launched using:
RESULT:
Template:
4IF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160707 for 1590 contacts (-101.1/contact) +
2D Compatibility (PS) -22672 + (NN) -11445 + (LL) 776
1D Compatibility (HY) -14400 + (ID) 3350
Total energy: -211798.0 ( -133.21 by residue)
QMean score : 0.712
(partial model without unconserved sides chains):
PDB file :
Tito_4IF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IF4-query.scw
PDB file :
Tito_Scwrl_4IF4.pdb
: