Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSSALSIRQLTKTYGNGFQALKGIDLDVAEGDFFALLGPNGAGKSTTIGILSTLVNKTSGSVSVFGHDLDKDPAGLKRCLGVVPQEFNFNQFEKVFDIVVTQAGYYGIPAKIAKERAERYLTQLGLWDKRNEASRMLSGGMKRRLMIARALVHQPRLLILDEPTAGVDIELRRSMWSFLTELNQEGISIILTTHYLEEAEQLCRNIAIIDHGEIVQNTSMRDLLMTLHSETFLLDLKNVQALPPTLDGYPTRLVDDHTLEVQVEKSQGINDLFAQLGAQGIEVLSLRNKTNRLEELFVSLVEKNLTRIAR |
| 1VPL Chain:A ((15-233)) | ---AVVVKDLRKRIGKK-EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL--------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VPL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -151775 for 1807 contacts (-84.0/contact) +
2D Compatibility (PS) -23493 + (NN) -7065 + (LL) 7040
1D Compatibility (HY) -17600 + (ID) 4100
Total energy: -196993.0 ( -109.02 by residue)
QMean score : 0.561
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