Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLFATGLAASFLLLPPAQAAPPAPYGVQPHQQAVQRAGEQRQRQLQEQR--QRFDEQRLQLQQDQLQRQ----QQNLQRQRQQRQMQDNLIRQQQLDQQRWRLEQDQRRLDSERRQLENRRRQSQSPAIR
3J04 Chain:A ((809-890))
------------------------------------RKAFAKRQQQLTAMKVIQRNCAAYLKLRNWQWWRLFTKVKPLLQVTRQEEEMQAK-------DEELQRTKERQQKAEAELKELEQKHTQ-------
General information:
TITO was launched using:
RESULT:
Template:
3J04.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 19597 for 302 contacts (64.9/contact) +
2D Compatibility (PS) -8726 + (NN) -5193 + (LL) 3972
1D Compatibility (HY) -1200 + (ID) 1150
Total energy: 7300.0 ( 24.17 by residue)
QMean score : 0.660
(partial model without unconserved sides chains):
PDB file :
Tito_3J04.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J04-query.scw
PDB file :
Tito_Scwrl_3J04.pdb
: