Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPLYVFMDSEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNGAELQVSAFCEIGDSIEIDTRTGEYKSRVKA
3OYY Chain:A ((4-189))
MKTAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPLYVFMDSEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQIAYTEPAVRGDTS--VMKTARLNNGAELQVSAFCEIGDSIEIDTRTGEYKSRV--
General information:
TITO was launched using:
RESULT:
Template:
3OYY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82698 for 1224 contacts (-67.6/contact) +
2D Compatibility (PS) -19356 + (NN) 1817 + (LL) 100
1D Compatibility (HY) -25600 + (ID) 9200
Total energy: -134937.0 ( -110.24 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_3OYY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OYY-query.scw
PDB file :
Tito_Scwrl_3OYY.pdb
: