Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MNPLIKTILSTNAGAGLAILRIVTGLTLMSHGSQKLFGMFGGAGLNGMAQWFESIGLTPGYLLATLAGSAEFFGGLALVIGLLVRPASV----VVGFTMIVAIFSVHIGNGFFITDNGYEYALTLLMISVALLIDGAGKFSLDGKLSR-
4DFC Chain:B ((128-250))
MASTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEH-----------------TKTLENLASQ-GYIRARIDG----------EVCDLSDPPKLELQKKHTIEVVVDRFKVRLTQ---RLAESFETALELSG-GTAVVADMDDPKAEELLFSAN
General information:
TITO was launched using:
RESULT:
Template:
4DFC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115485 for 792 contacts (-145.8/contact) +
2D Compatibility (PS) -11540 + (NN) 286 + (LL) 1012
1D Compatibility (HY) -3600 + (ID) 1150
Total energy: -130477.0 ( -164.74 by residue)
QMean score : 0.216
(partial model without unconserved sides chains):
PDB file :
Tito_4DFC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DFC-query.scw
PDB file :
Tito_Scwrl_4DFC.pdb
: