Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSLHLDALHWSPDASTELLRGVHLEVPAGSFVGLIGPNGSGKTSLLRCAFRYARPQRGRVVLDGDDLWRQPPRWAARRIAVVLQEFPEDFGLAVEDVVAMGRTPHKGLFDGHGADDRQRVRQALLQVGLEGRAASPFASLSGGEKQRALLARALVQ------EPRLLILDEPTNHLDPRYQLELLRLLRSLG----LSTLASFHDLNLAAAFCDRLYVLDGGRIVAQGTPTEVLDADLLWRVFGVRALVDRHPLADHPRLTWITQA
4G1U Chain:C ((26-262))
------------------LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG------GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAETLTQWYQADLGVSRHPESALPQI------
General information:
TITO was launched using:
RESULT:
Template:
4G1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161212 for 1748 contacts (-92.2/contact) +
2D Compatibility (PS) -24954 + (NN) -18098 + (LL) 1680
1D Compatibility (HY) -15600 + (ID) 4850
Total energy: -223034.0 ( -127.59 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_4G1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G1U-query.scw
PDB file :
Tito_Scwrl_4G1U.pdb
: