Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVDHSIKGKTVLITGGAKNLGGLIARDLAAHGAKAITIHYNSAASKADADATVAALQAAGAKAVALQGDLTSAAAMEKLFADAIAAVGKPDIAINTVGKVLKKPITEISETEYDEMSAVNSKSAFFFLREAGKHVNDNGKICTLVTSLLGAYTPYYAAYAGTKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPAEGADAVDYLKNAAALSPFSKTGLTDIDDVVPFIRHLVSEGWWITGQTILINGGFSTK
3KSU Chain:A ((5-252))
---HDLKNKVIVIAGGIKNLGALTAKTFALESVN-LVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTGFYST-----APVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQE------------MGNQ-----LTKIEDIAPIIKFLTTDGWWINGQTIFANGGYTTR
General information:
TITO was launched using:
RESULT:
Template:
3KSU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127887 for 1951 contacts (-65.5/contact) +
2D Compatibility (PS) -25432 + (NN) -13728 + (LL) 1392
1D Compatibility (HY) -20400 + (ID) 5850
Total energy: -191905.0 ( -98.36 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_3KSU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KSU-query.scw
PDB file :
Tito_Scwrl_3KSU.pdb
: