Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQAFTVVIPARYASTRLPGKPLQDIAGQPMIQRVWNQARKSAASRVVVATDDERILAACQGFGAEALLTRAEHNSGTDRLEEVASRLGLASDAIVVNVQGDEPLIPPALIDQVAANLAAHPEAAIATLAEPIHEVSALFNPNVVKVATDIDGLALTFSRAPLPWARDAFARDRDSLPEGVPYRRHIGIYAYRVGFLADFVAWGPCWLENAESLEQLRALWHGVRIHVADARENMLPGVDTPEDLERVRRVLGG
4XWI Chain:A ((11-262))
--QAFTVVIPARYASTRLPGKPLQDIAGQPMIQRVWNQARKSAASRVVVATDDERILAACQGFGAEALLTRAEHNSGTDRLEEVASRLGLASDAIVVNVQGDEPLIPPALIDQVAANLAAHPEAAIATLAEPIHEVSALFNPNVVKVATDIDGLALTFSRAPLPWARDAFARDRDSLPEGVPYRRHIGIYAYRVGFLADFVAWGPCWLENAESLEQLRALWHGVRIHVADARENMLPGVDTPEDLERVRRVLGG
General information:
TITO was launched using:
RESULT:
Template:
4XWI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152316 for 2057 contacts (-74.0/contact) +
2D Compatibility (PS) -28222 + (NN) -18798 + (LL) 260
1D Compatibility (HY) -32400 + (ID) 12600
Total energy: -244076.0 ( -118.66 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_4XWI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XWI-query.scw
PDB file :
Tito_Scwrl_4XWI.pdb
: