Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRRQQSGFTLIEIMVVVVILGILAALVVPQVMSRPDQAKVTVAKGDIKAIAAALDMYKLDNFAYPSTQQGLEALVKKPTGNPQPKNWNKDGYLKKLPVDPWGNPYQYLAPGTKGPFDLYSLGADGKEGGSDNDADIGNWDN
2KEP Chain:A ((39-148))
--------------------------------MSRPDQAKVTVAKGDIKAIAAALDMYKLDNFAYPSTQQGLEALVKKPTGNPQPKNWNKDGYLKKLPVDPWGNPYQYLAPGTKGPFDLYSLGADGKEGGSDNDADIGNWDN
General information:
TITO was launched using:
RESULT:
Template:
2KEP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5983 for 806 contacts (7.4/contact) +
2D Compatibility (PS) -12333 + (NN) -14914 + (LL) 4024
1D Compatibility (HY) -11600 + (ID) 5500
Total energy: -34340.0 ( -42.61 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_2KEP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KEP-query.scw
PDB file :
Tito_Scwrl_2KEP.pdb
: