Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEPNLRGNGKVALVTGAARGIGLGISAWLIAEGWQVVLADNDRERGARVAEALGEHAWFVAMDVAQEGQVAMSVAEVLGQFGRLDGLVCNAAIANPRNTPLEALSLGEWTRTLAVNLTGPMLLAKYCTPYLR-AHNGAIVNIASTRAHQSEPDSEAYAASKGGLLALTHALAASLGP-DIRVNALSPGWIDTREAAEREA-APLTELDH----DQHLVGRVGTVEDVASLVAWLLSEDAGFVTGQEFLVDGGMTRKMIYLD
2D1Y Chain:C ((6-246))
---------GKGVLVTGGARGIGRAIAQAFAREGALVALCDL-RPEGKEVAEAIG--GAFFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSA--LTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLFLASEKASFITGAILPVDGGMT-------
General information:
TITO was launched using:
RESULT:
Template:
2D1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158577 for 2057 contacts (-77.1/contact) +
2D Compatibility (PS) -25112 + (NN) -6923 + (LL) 1196
1D Compatibility (HY) -12000 + (ID) 5450
Total energy: -206866.0 ( -100.57 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_2D1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D1Y-query.scw
PDB file :
Tito_Scwrl_2D1Y.pdb
: