Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNAFSLAPLFRHSVGF-----DRFNDL--FESALRNE-AGSTYPPYNVEKHGDDEYRIVIAAAGFQEEDLDLQVERGVLTVSGGKREKSTDNVTYLHQGIAQRAFKLSFRL--------ADHIEVKAASLANGLLNIDLVRLVPEEAKPKRIAINGQRPALDNQ
3W1Z Chain:A ((10-142))
-----------------PPTVNDLFSDFVSYSPRLNNQIPGELSPSIDVHE-GKDTVSVDVELPGVKKEDVQVHYDSGKLTISGEVVNERKNESTEGNQRWSERRFGSFSRTITIPAKIDADRIE---ANFSNGLLTVTLPKVEKSQTK-KQIAI----------
General information:
TITO was launched using:
RESULT:
Template:
3W1Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24248 for 606 contacts (-40.0/contact) +
2D Compatibility (PS) -12175 + (NN) 984 + (LL) 1520
1D Compatibility (HY) -6000 + (ID) 1900
Total energy: -41819.0 ( -69.01 by residue)
QMean score : 0.213
(partial model without unconserved sides chains):
PDB file :
Tito_3W1Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W1Z-query.scw
PDB file :
Tito_Scwrl_3W1Z.pdb
: