Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSALHAFPGGLCLPANKERSTALPIQQAPLAQRYIVPLGQHIGAPARPCVEVGQAVLKGQTIALPDGTVSAALHAPTSGTVVAIGAHPYPHASGLPAPAIVIASDGLERWTELHPCPDFRAESPLALLERIRAAGIGGLGGAGFPTAAKLAARPAEKIHTLVVNGAECEPYISADDLLMRERATQVLGGIDILVQILCPEEVLVGIEDDKPEAIAALGAALGERPYRIVALPTRYPSGGERQLIQLLTGREVPADGLPADIGILCQNVGTLAAVHDAVVLGRPLISRITTLAGGALERPMNVEALIGTPVHELLAFAGLAEGRLERVLMGGPMMGFALPDLSVPLIKTCNCLLAGDATELPEPVPAMPCIRCGDCAQVCPVSLLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCPSSIPLVQYYRASKAEIREQRQKLLKAEQSRERFEQRQARLRRDEERRAAERAQRAEKAALARAAQAEREEAAPATAVDPVQAAIERARARKQAGSGSERLKRLKIEASMARVALKKAEKQLLSHDTPEQHGLVAELRAAAEAADKALADAEASLPRDLPSAPPAALDDEAELKKAKAQAAMARAQLKRSEKAFGEAPGAEQRATLDELRAEVERCEATLARLERHAPKPAAPGDDGQAALKRAKIALVGKRAALKKAEQAGVMDSELERLRGELQAAERDLHAAEDACGKPAPELVRIDKRPVDPRIRELKTELAYARAALKKLERLANADAAALAAARARLSAAERALTEHGTE |
3CF4 Chain:A ((411-478)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VNMVAKCADCGACLLACPEEIDIPEAMGFAKKGDFS-YFEEIHDTCIGCRRCEQVCKKEIPILNVIEKI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3CF4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -53834 for 483 contacts (-111.5/contact) +
2D Compatibility (PS) -7235 + (NN) -7903 + (LL) 53412
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -19160.0 ( -39.67 by residue)
QMean score : 0.449
|
|
|