Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPYDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPLGRLGKPIEAARAILFLASPLSAYTTGSHIDVSGGLSRHA
3LF2 Chain:A ((3-265))
--PYDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEA------DWAQWTAQLARNKQIPLGRLGKPIEAARAILFLASPLSAYTTGSHIDVSGGLSRHA
General information:
TITO was launched using:
RESULT:
Template:
3LF2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -183967 for 2193 contacts (-83.9/contact) +
2D Compatibility (PS) -28707 + (NN) -17178 + (LL) 960
1D Compatibility (HY) -33600 + (ID) 12850
Total energy: -275342.0 ( -125.55 by residue)
QMean score : 0.724
(partial model without unconserved sides chains):
PDB file :
Tito_3LF2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LF2-query.scw
PDB file :
Tito_Scwrl_3LF2.pdb
: