Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEAGFGPGRSNMHTGETLAAAPPARPLRQSRLGGLSLFLALAGVAIALAVMALALGERIDLSDENHLLGLFAALL----AVFAVSTCGLVLGLAGLLRRSRKRHLALAGIVLNLSCLLWGWHALSTAAAAILMVLGQTGLSFLSALAVLFGMIFFRQA
5DA0 Chain:A ((22-145))
----------------------------RKDVLAGIVVALALIPEAIAFSIIA-GVDPQVGLY-ASFIIALITAFLGGRPGMISAATGAMALLMTGLVKDHGIQYLFAATVLTGVLQVVFGWAKL---ARYLKFVPRSVMVGFVNALAILIFM------
General information:
TITO was launched using:
RESULT:
Template:
5DA0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65013 for 677 contacts (-96.0/contact) +
2D Compatibility (PS) -11988 + (NN) -4913 + (LL) 2024
1D Compatibility (HY) -14000 + (ID) 1550
Total energy: -95440.0 ( -140.97 by residue)
QMean score : 0.105
(partial model without unconserved sides chains):
PDB file :
Tito_5DA0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DA0-query.scw
PDB file :
Tito_Scwrl_5DA0.pdb
: