Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSHDLLLNLKDLACGYASQKVVQDLDLHLNAGDIGCLLGPSGCGKTTTLRAIAGFEPVLAGQIELGGEVISRPGFTLAPEKRRIGMVFQDYALFPHLSVADNVGFGIRKH----PQRERLVRELLELVKLDHLAARHPHELSGGQQQRVALARALAPEPLLLLLDEPFSNLDVELRRSLSQEVREILKARGTSAILVTHDQEEAFAVCDHIGVFKEGHLEQWDTPYNLYHEPLTPFVASFVGQG--YFIRGQLLSPDTVQT--EL-----GVIRGNR-AYSLPSGSAVDVLLRPDDLVHAPQGE--LKARIVGKTFLGAATLYRLQLPTG-TQLESIFPSHADHQPGDDVGIRVAADHLVVFAARGSVAAHLAPVQA |
| 3RLF Chain:A ((2-366)) | ----ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND----TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTACRRLH---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3RLF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -225768 for 2715 contacts (-83.2/contact) +
2D Compatibility (PS) -36965 + (NN) -11720 + (LL) 336
1D Compatibility (HY) -26800 + (ID) 5850
Total energy: -306767.0 ( -112.99 by residue)
QMean score : 0.447
|
|
|