Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALQRTLSIIKPDAVSKNVIGEILTRFEKAGLRVVAAKMVQLSEREAGGFYAEHKERPFFKDLVSFMTSGPVVVQVLEGEDAIAKNRELMGATDPKKADAGTIRADFAVSIDENAVHGSDSEASAAREIAYFFAATEVCERIR
3VGU Chain:A ((2-141))
-ATERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDLVGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRADYAQSIDANAVHGSDSPESAAREIAYFFAESEICSR--
General information:
TITO was launched using:
RESULT:
Template:
3VGU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56674 for 1074 contacts (-52.8/contact) +
2D Compatibility (PS) -14725 + (NN) -1718 + (LL) 512
1D Compatibility (HY) -14800 + (ID) 5550
Total energy: -92955.0 ( -86.55 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_3VGU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VGU-query.scw
PDB file :
Tito_Scwrl_3VGU.pdb
: