Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSAKNLKITFNPGTPIETRALRGLSLDIPAGQFVTVIGSNGAGKSTFLNAVSGDLPIDSGQILIDDEDVTRKPVWARANR--VARVFQDPMAGTCEDLTIEENMALAQRRGAGRGLGRAVQASMRDGFRESLATLGLGLENRLGDRIGL-LSGGQRQAVSLL-MAALQPSRILLLDEHTAALDPRTADFVLHLTARIVAEKKLTTMMVTHSMRQALDVGERTVMLHQGQVVL-----DVSGE----QRKGLDVPDLLAMFEKVRGEKLADDALLLG
4MKI Chain:B ((7-260))
-IKVENVSFIYNEGTPYATVALKDINFSIDDEEFVGIIGHTGSGKSTLIQQLNGLLKPSKGKIYINGIDITDKKVSLKDIRKQVGLVFQYPEYQLFEE-TVFKDIAFGP---SNLGLS---EEEVKERVYEAMEIVGISKE--LADKSPFELSGGQKRRVAIAGILAMRP-KILILDEPTAGLDPKGKQEILNKIKEIHDKYKMITILVSHNMEDIARIADKIIVMNRGKIELIGTPREVFREAERLEKIGLSVPQITSLARELR------------
General information:
TITO was launched using:
RESULT:
Template:
4MKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131959 for 1866 contacts (-70.7/contact) +
2D Compatibility (PS) -26746 + (NN) -16759 + (LL) 1504
1D Compatibility (HY) -21600 + (ID) 3850
Total energy: -199410.0 ( -106.86 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_4MKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKI-query.scw
PDB file :
Tito_Scwrl_4MKI.pdb
: