Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLYRAAIHQLFLALDLPTPNDEESVLSLQVGPHLCHLAEHPTDHLLMFTRLEGQGDATANEQNLFSQDPCKPILGRDPESGERLLWNRQPLQLLDRAQIHHQLEQLVAAAEELR
4JMF Chain:C ((1-116))
MNPLYRAAIHQLFLALDLPTPNDEESVLSLQVGPHLCHLAEHPTDHLLMFTRLEGQGDATANEQNLFSQDPCKPILGRDPESGERLLWNRQPLQLLDRAQIHHQLEQLVAAAEELR
General information:
TITO was launched using:
RESULT:
Template:
4JMF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60601 for 808 contacts (-75.0/contact) +
2D Compatibility (PS) -12895 + (NN) -12152 + (LL) 0
1D Compatibility (HY) -14800 + (ID) 5800
Total energy: -106248.0 ( -131.50 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_4JMF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JMF-query.scw
PDB file :
Tito_Scwrl_4JMF.pdb
: