Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKAYDIEIVNDAAHAGEANH------GWCFGLPPGIRPEQWPLDPDT---------GYPLMHGFTLLLPEDYRVHGPEIVALSF-----FSLAPDQNDGGPTSVDGIREMLIDPPAQPPAEAELRPFWEAGRNSHPRL-HRMEDILGGAYALILLDAAEFSGAPCQPRALPAGNPLLAQTEP--PQWLEAGSAASFVP---------DWAEDDYYLLRALGGRPAAGHQQ-RYPLRW-----TARAQDPNAGVVPSEYGDGGYQL---------PHYWLDGKIERDNYREHPWVEGHLPNHIGG-TMRPVQGVPE-MSPFYVEFEEYLGGYNFG-----GGNAQLDFRDMRFDWACG---------------------------- |
| 3J9Q Chain:A ((2-386)) | SFFHGVTVTNVDIGARTIALPASSVIGLCDVFTPGAQASAKPNVPVLLTSKKDAAAAFGIGSSIYLACEAIYNRAQAVIVAVGVETAETPEAQASAVIGGISAAGERTGLQALLDGKSRFNAQPRLLVAPGHSAQQAVATAMDGLAEKLRAIAILDGPNSTDEAAVAYAKNFGSKRLFMVDPGVQVWDSATNAARNAPASAYAAGLFAWTDAEYGFWSSPSNKEIKGVTGTSRPVEFLDGDETCRANLLNNANIATIIRDDGYRLWGNRTLSSDSKWAFVTRVRTMDLVMDAILAGHKWAVDRGITKTYVKDVTEGLRAFMRDLKNQGAVINFEVYADPDLNSASQLAQGKVYWNIRFTDVPPAENPNFRVEVTDQWLTEVLDVA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3J9Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -23369 for 2118 contacts (-11.0/contact) +
2D Compatibility (PS) -31471 + (NN) -2451 + (LL) 0
1D Compatibility (HY) -5600 + (ID) 2750
Total energy: -65641.0 ( -30.99 by residue)
QMean score : 0.059
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