Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLLVLAVQMSGCATVRT-------------LDAAKPGA--------PVVYAGTRLDWYS---------------LHGGCCPMERFGAEAPAHPGLDLPGSALLDTLLLPFSLATAIGLNLGVSGGM-------
5A1U Chain:H ((1-134))
MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFT
General information:
TITO was launched using:
RESULT:
Template:
5A1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24313 for 596 contacts (-40.8/contact) +
2D Compatibility (PS) -9418 + (NN) 1881 + (LL) 0
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -35650.0 ( -59.82 by residue)
QMean score : 0.109
(partial model without unconserved sides chains):
PDB file :
Tito_5A1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5A1U-query.scw
PDB file :
Tito_Scwrl_5A1U.pdb
: