Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIAAYQARCQARVDAALDALFVAPREELQRLYEAMRYSVMNGGKRVRPLLAYAACEALGGAPQRADAAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHRAFDEATAILAADGLQALAFEVLADTRRNPQEHAVCLEMLTRLARAAGSAGMVGGQAIDLGSVGVALDQAALEVMHRHKTGALIEASVRLGALASGRAEPASLAALERYAEAIGLAFQVQDDILDVESDTATLGKTQGKDQAHNKPTYPALLGLEAAKGYALELRDLALAALDGFPPSADPLRQLARYIVERRN
3ZMB Chain:A ((2-295))
MIAAYQARCQARVDAALDALFVAPREELQRLYEAMRYSVMNGGKRVRPLLAYAACEALGGAPQRADAAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHRAFDEATAILAADGLQALAFEVLADTRRNPQEHAVCLEMLTRLARAAGSAGMVGGQAIDLGSV--ALDQAALEVMHRHKTGALIEASVRLGALASGRAEPASLAALERYAEAIGLAFQVQDDILDVE------------------PTYPALLGLEAAKGYALELRDLALAALDGFPPSADPLRQLARYIVERR-
General information:
TITO was launched using:
RESULT:
Template:
3ZMB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152903 for 2352 contacts (-65.0/contact) +
2D Compatibility (PS) -31342 + (NN) -34280 + (LL) 432
1D Compatibility (HY) -34400 + (ID) 13700
Total energy: -266193.0 ( -113.18 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_3ZMB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZMB-query.scw
PDB file :
Tito_Scwrl_3ZMB.pdb
: