Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKSWLTASLLALTVASPFAAADIQGHKAGDFIIRGGFATVDPDDSSSDIKLDGAKQRGTKATVDSDTQLGLTFTYMFADKWGVELVAATPFNHQVDVKGLGPGLDGKLADIKQLPPTLLLQYYPMGGTNSAFQPYGGLGVNYTTFFDEDLASNRKAQGFSSMKLQDSWGLAGELGFDYMLNEHALFNMAVWYMDIDTKASINGPSALGVNKTKVDVDVDPWVYMIGFGYKF
2X27 Chain:X ((1-210))
----------------------DIQGHKAGDFIIRGGFATVDPDDSSSDIKLDGAKQRGTKATVDSDTQLGLTFTYMFADKWGVELVAATPFNHQVDVKGL---LDGKLADIKQLPPTLLLQYYPMGGTNSAFQPYGGLGVNYTTFFDEDLASNRKAQGFSSMKLQDSWGLAGELGFDYMLNEHALFNMAVWYMDIDTKASINGPSALGVNKTKVDVDVDPWVYMIGFGYKF
General information:
TITO was launched using:
RESULT:
Template:
2X27.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33700 for 1715 contacts (-19.7/contact) +
2D Compatibility (PS) -22122 + (NN) -930 + (LL) 1816
1D Compatibility (HY) -29200 + (ID) 10350
Total energy: -94486.0 ( -55.09 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_2X27.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2X27-query.scw
PDB file :
Tito_Scwrl_2X27.pdb
: