Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVFQHDIYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGSADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLARWGEAPEVASAAAFLCGPGASFVTGAVLAVDGGYLCA
4AVY Chain:A ((1-241))
MVFQHDIYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGSADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLARWGEAPEVASAAAFLCGPGASFVTGAVLAVDGGYLCA
General information:
TITO was launched using:
RESULT:
Template:
4AVY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137012 for 2069 contacts (-66.2/contact) +
2D Compatibility (PS) -26396 + (NN) -15003 + (LL) 0
1D Compatibility (HY) -31600 + (ID) 12050
Total energy: -222061.0 ( -107.33 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_4AVY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AVY-query.scw
PDB file :
Tito_Scwrl_4AVY.pdb
: