Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMPDEALVYVVDDDQGMLESTVWLLESVGLKARPFTQGRDFLDACEGGRHACVLLDVRMPGMGGLNVQDELLARGIDLPVIFVSGHADVPIVVRAFKAGAVDFIEKPYNEQLLLDSVQQALDRHARRRRHHDLDAGLHERLDSLTPRERDVLLPLVRGYTSREVAEQLEVSVKTVDLYRARVMKRMQAQTLPELVGMAIAAGLVDPLRLREGT
1YIO Chain:A ((3-200))
----AKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARETQDQLEQLFSSLTGREQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHLVEKY------------
General information:
TITO was launched using:
RESULT:
Template:
1YIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147539 for 1457 contacts (-101.3/contact) +
2D Compatibility (PS) -21516 + (NN) -8611 + (LL) 936
1D Compatibility (HY) -16400 + (ID) 3550
Total energy: -196680.0 ( -134.99 by residue)
QMean score : 0.719
(partial model without unconserved sides chains):
PDB file :
Tito_1YIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YIO-query.scw
PDB file :
Tito_Scwrl_1YIO.pdb
: