Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALTNEDIINAVSEMSVMQVVELIKAMEEKFGVTAAAATVAAAGPAAAAA-----EEQTEFTIVLAEAGDKKVNVIKVVRELTGLGLKEAKAVVD--GAPG-VVKEGASKEEAEAAKKALEEAGAKVELK
1DD3 Chain:A ((1-128))
--MTIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEEKTEFDVVLKSFGQNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVELK
General information:
TITO was launched using:
RESULT:
Template:
1DD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48653 for 768 contacts (-63.4/contact) +
2D Compatibility (PS) -13584 + (NN) -7848 + (LL) 352
1D Compatibility (HY) -11200 + (ID) 3600
Total energy: -84533.0 ( -110.07 by residue)
QMean score : 0.752
(partial model without unconserved sides chains):
PDB file :
Tito_1DD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DD3-query.scw
PDB file :
Tito_Scwrl_1DD3.pdb
: