Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEADYLRLLTRQAEQANDFLSNARKWDRERWVCQRFLEALNVPYRQEDFAAPGEQPPDVLFKGAGFEVFFVLDEGRRLNEEWREELTRRRQAVSLRQLIRREERPQRIAAAELQARLAPTLRKKAHNYSERGIDHGELDLLAFVNLKRAVPDFNTPFPPPTEYLRQGWRSLSMVGPTFARVLFAHSGAPEFLRANLGRSILFDAGVGL
1Y0K Chain:A ((2-209))
-NEADYLRLLTRQAEQANDFLSNARKWDRERWVCQRFLEALNVPYRQEDFAAPGEQPPDVLFKGAGFEVFFVLDE-----------------------------RPQRIAAAELQARLAPTLRKKAHNYSERGIDHGELDLLAFVNLKRAVPDFNTPFPPPTEYLRQGWRSLSMVGPTFARVLFAHSGAPEFLRANLGRSILFDAGVGL
General information:
TITO was launched using:
RESULT:
Template:
1Y0K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70271 for 1341 contacts (-52.4/contact) +
2D Compatibility (PS) -19503 + (NN) -7853 + (LL) 3144
1D Compatibility (HY) -17200 + (ID) 7150
Total energy: -118833.0 ( -88.62 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_1Y0K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y0K-query.scw
PDB file :
Tito_Scwrl_1Y0K.pdb
: