Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDLQQLFENNVRWAEAIKQEDPDFFAKLARQQTPEYLWIGCSDARVPANEIVGMLPGDLFVHRNVANVVLHTDLNCLSVIQFAVDVLKVKHILVTGHYGCGGVRASLHNDQLGLIDGWLRSIRDLAYEYREHLEQLPTEEERVDRLCELNVIQQVANVSHTSIVQNAWHRGQSLSVHGCIYGIKDGLWKNLNVTVSGLDQLPPQYRLSPLGGCC
4RXY Chain:A ((3-211))
--DLQQLFENNVRWAEAIKQEDPDFFAKLARQQTPEYLWIGCSDARVPANEIVGMLPGDLFVHRNVANVVLHTDLNCLSVIQFAVDVLKVKHILVTGHYGCGGVRASLHNDQLGLIDGWLRSIRDLAYEYREHLEQLPTEEERVDRLCELNVIQQVANVSHTSIVQNAWHRGQSLSVHGCIYGIKDGLWKNLNVTVSGLDQLPPQYRLSPL----
General information:
TITO was launched using:
RESULT:
Template:
4RXY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168841 for 1541 contacts (-109.6/contact) +
2D Compatibility (PS) -22376 + (NN) -8738 + (LL) -52
1D Compatibility (HY) -32400 + (ID) 10450
Total energy: -242857.0 ( -157.60 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_4RXY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RXY-query.scw
PDB file :
Tito_Scwrl_4RXY.pdb
: