Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSRRLPFLLRCALFCGAGLLAATAQARMESLDDDQLSDVVGQAFINLTTDAANGLNFTRINFGADIETQLNMKKLQLGQYNRSGELAGSADIAIDNFALGTVNDTTG----------------AINPFLISN-------PYIEFAYDGSKMVGIRI---------GFGEAKGYLSGDIKTLTGNVPVDLYGTGSQLGGSISCGLLALDCLAAKTAITLT---GSSQYTAQAELVNSSGNPDPIRAAMIGLKNGTALDMHDSTIIGSLVNVLLPFLTSNDCKLMGA----QTCFNLAQYQSFPIGTVDPNNAQNFIDSSKGFFISMQSQNVQWRDQQDPSKLVAALA----GAFLNMSRNADGTAPIKVDFGQAFNGIPRQDTCLGGLNKG--C---- |
| 4J3R Chain:A ((4-383)) | --ATLPTTAS-----SSTAVASSQLDQLANFAYNVTTDSVAGCTLQNLRVRRDWRAFSKTQKKDYINSVLCLQKLP---SRTPAHLAPGARTRYDDFVATHINQTQIIHYTGTFLAWHRYFIYEFEQALRDECSYTGDYPYWNWGADADNMEKSQVFDGSETSMSGNGEYIPN-QGDIKLLLGNYPAIDLPPGS--GG---------GCVTSGPFKDYKLNLGPAALSLPGGNMTAAANPLTYNPRCMKRSLTTEILQRYNT-FPKIVELILDSDDIWDFQMTMQGVPGSGSIGVHGGGHYSMGG-DPGRDVYVSPGDTAFWLHHGMIDRVWWIWQNLDLRKRQNAISGTGTFMNNPASPNTTLDTVIDLGYA-NGGPIAMRDLMSTTAGPFCYVYL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J3R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 29506 for 2530 contacts (11.7/contact) +
2D Compatibility (PS) -34457 + (NN) -8863 + (LL) 2572
1D Compatibility (HY) -6000 + (ID) 3300
Total energy: -20542.0 ( -8.12 by residue)
QMean score : 0.087
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