Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNPSTAARALGIDFGTSNSTVGWWRPEVEPLIELEDGKITLPSVVFFNVEERRPVYGRQALGEYLEGYEGRLMRSLKSLLGSKLLKSETTVLGSALPFK-------------------------DLLGLFIGQLKARGEAAAGQAFDAVVLGRPVFFVDDDPEADREAQDTLVQVANKLGFKEVSFQYEPIAAAFDY---ERCIQREELVLIVDIGGGTSDFSLVRLAPERRNLAERQDDILATGG-VHIGGTDFDKQLSLEGVMPLFGYGSRMKSDAFMPTSYHLNLATWHTINAVYAQKSQLALKNMRYDIVDSTGIDRLFRLIEERAGHWLAMQVEDSKIRLTETERLHLSLERIEAG--LGVELTRGLFENAVDGLLERVRNSVAQLLASAGVDPDRVDTVFFTGGSSGIPALRRSVSAMLPNARHVEG-NLFGSIGSGLAIEAKKRYG |
| 3LDO Chain:A ((3-379)) | ----DVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGER-LIGDAAKNQLTSNPENTVFDA-KRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFND----AQRQATKDAGTIA---GLNVMRIINEPTAAAIAYGLDKR--EGEKNILVFDLGGGTFDVSLL-------TIDNGVFEVVATNGDTHLGGEDFDQRV-MEHFIKL------------------------------YKKKTG---KDVRKD---------------NRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQA----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -163922 for 2895 contacts (-56.6/contact) +
2D Compatibility (PS) -36491 + (NN) -8254 + (LL) 4524
1D Compatibility (HY) -19200 + (ID) 5050
Total energy: -228393.0 ( -78.89 by residue)
QMean score : 0.433
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