Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTPQPLADNLSPPDPARLAQSIKDWGRELGFQQVGISDVELGEHEAHLQRWLEAGYHGEMDYMAAHGSKRSRPAELVPGTLRVISLRMDYLPGDTRMAQVLATPEKAYVSRYALGRDYHKLIRKRLQQLAERIQAEVGPFGFRAFVDSAPVLEKAIAEQAGLGWIGK-NTLVLNRKAGSYFFLGELFVDMPLPVDPAMD---SEHCGRCSACLDICPTAA--------FVG--PYRLDARRCISYLTIEYKGAIPLELRPLIGNRVFGCDDCQIVCPWNRFARPTGQGDFQPRHSLDNAELAELFLWSEEEFLGRTEGSPLRRAGYERWLRNLAVGLGNAPSTIPVLEALKARRGFPSELVREHVEWALRRHGET |
| 4RAS Chain:A ((466-572)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------AGLGEVSRIGDTLLNPFIGPRSKSIVFTTDLPMSVDRPIDFGLQDFCNQCRKCARECPCNAISFGDKVMFNGYEIWKADVEKCTKYRVTQMKGS--------------ACGRCMKMCPWNR----------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RAS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -31915 for 526 contacts (-60.7/contact) +
2D Compatibility (PS) -9693 + (NN) -1466 + (LL) 18016
1D Compatibility (HY) -2800 + (ID) 1600
Total energy: -29458.0 ( -56.00 by residue)
QMean score : 0.250
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