Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRDTLHDLHRPLGDTGLAVSPLGLGTVKFGRDQGVKYPSGFTIPDDREAADLLALARDLGINLIDTAPAYGRSEERLGPLLRGQREHWVIVSKVGEEFVDGQSVFDFSAAHTRRSVERSLKRLETDRIELVLVHSDGNDLDILENSEVYPTLAALKREGLIGAYGLSGKTVEGGLRALREGDCAMVTYNLNERAERPVIEYAAAHAKGILVKKALASGHACLGAGQDPVRASFELVFDQPGVAAAIVGTINPLHLAHNVAMAAQALKKA
4EXA Chain:F ((23-290))
MIRDTLHDLHRPLGDTGLAVSPLGLGTVKFGRDQGVKYPS--TIPDDREAADLLALARDLGINLIDTAPAYGRSEERLGPLLRGQREHWVIVSKVGEE---GQSVFDFSAAHTRRSVERSLKRLETDRIELVLVHSDGNDLDILENSEVYPTLAALKREGLIGAYGLSGKTVEGGLRALREGDCAMVTYNLNERAERPVIEYAAAHAKGILVKKALAS-------GQDPVRASFELVFDQPGVAAAIVGTINPLHLAHNVAMAAQALK--
General information:
TITO was launched using:
RESULT:
Template:
4EXA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163762 for 2220 contacts (-73.8/contact) +
2D Compatibility (PS) -27770 + (NN) -13322 + (LL) 636
1D Compatibility (HY) -32400 + (ID) 12800
Total energy: -249418.0 ( -112.35 by residue)
QMean score : 0.654
(partial model without unconserved sides chains):
PDB file :
Tito_4EXA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EXA-query.scw
PDB file :
Tito_Scwrl_4EXA.pdb
: