Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALAKRIIPCLDVDNGRVVKGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDGRDTTLHTVERMASQVFIPLTVGGGVRSVQDIRNLLNAGADKVSINTAAVFNPEFVGEAADRFGSQCIVVAIDAKKVSAPGEAPRWEIFTHGGRKPTGLDAVLWAKKMEDLGAGEILLTSMDQDGVKSGYDLGVTRAISEAVNVPVIASGGVGNLEHLAAGI-LEGKADAVLAASIFHFGEYTVPEAKAYLASRGIVVR
4EVZ Chain:B ((2-250))
--LAKRIIPCLDVKDGRVVKGVNFENLRDAGDPVELAARYDEEGADELVFLDIT----GRETMLEVVERTAEQVFIPLTVGGGIRSVEDASRLLRAGADKVSINTAAVKNPELITEAAEEFGSQAVVVAIDAKRVGGG-----WEVFTHGGRKPTGLDAVEWARKVVELGAGEILLTSMDRDGTKAGYDLELTRAVSEAVSVPVIASGGAGELEHFAEVFELEG-ADAALAASIFHFGEITIREVKAYLRERGIEVR
General information:
TITO was launched using:
RESULT:
Template:
4EVZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159774 for 2162 contacts (-73.9/contact) +
2D Compatibility (PS) -26733 + (NN) -9894 + (LL) 684
1D Compatibility (HY) -26000 + (ID) 9200
Total energy: -230917.0 ( -106.81 by residue)
QMean score : 0.706
(partial model without unconserved sides chains):
PDB file :
Tito_4EVZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EVZ-query.scw
PDB file :
Tito_Scwrl_4EVZ.pdb
: