Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPPITITRLDLQRLERLLDGLDE-FGPAAEALEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSGKEYTLTLVYPEDVAG-EGKVSILAPVGTALLGLTIGQTIDWPAPSGKTLKLTLLEIEYQPEAAGDYAR
3BMB Chain:A ((2-136))
-SRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL
General information:
TITO was launched using:
RESULT:
Template:
3BMB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73685 for 1019 contacts (-72.3/contact) +
2D Compatibility (PS) -14684 + (NN) -10123 + (LL) 208
1D Compatibility (HY) -12000 + (ID) 3200
Total energy: -113484.0 ( -111.37 by residue)
QMean score : 0.708
(partial model without unconserved sides chains):
PDB file :
Tito_3BMB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BMB-query.scw
PDB file :
Tito_Scwrl_3BMB.pdb
: