@TOME V3
(Apr 2019)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : A4BF35_9GAMM: (2019-01-25 )
MAKPELIELATSCFGLTVDEQLPIGESFASEVLRFRSGRQCYVLKRPFSLEKAEREYFWLKRLSHCPFVPDALEITKANDHGLILMTSLEGMPLKSFHQLSHRDLSKLGHDLRALHTVSADSFDGHKSWRELLLSNTDRYIDKIIGPARKTAEMAYARFHEGIDEIPDSYLPTATHFDFRDGNILADESGYTGIIDFESMRGGHASMDFFKLLTHPSDMNDIELTALLAGYGSADWLESMAQLKHLVACYAVYHGLAGLAWCSQREQTSTEFYQRCAGFLEQGR

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_5(3HAM)
?
[Raw transfer]




GDP_A_2(3TDW)
?
[Raw transfer]




ADP_A_7(1J7L)
KKA3_ENTFL
[Raw transfer]




ADP_A_7(1J7L)
KKA3_ENTFL
[Raw transfer]




AMP_A_3(4R78)
?
[Raw transfer]




MES_A_3(3I1A)
?
[Raw transfer]




MES_B_5(3I1A)
?
[Raw transfer]




ADN_A_5(2Q83)
COTI_BACSU
[Raw transfer]




BEZ_A_2(6EF6)
?
[Raw transfer]




UNL_A_2(3F7W)
?
[Raw transfer]




GMP_A_2(5IGI)
?
[Raw transfer]




EDO_A_12(3CSV)
?
[Raw transfer]




44 HHSearch 85.4519% -11 - C2 -6EF6 1.3 ?
57 HHSearch 81.0017% -29 - C2 -3F7W 3.0 ?
33 Fugue 80.8918% -9 - C2 -4OCV - ? -
51 HHSearch 79.0717% -18 - C2 -3I1A 1.9 ?
59 SP3 78.6520% 0 - C2 -1ND4 - KKA2_KLEPN -
47 HHSearch 78.3516% -29 - C2 -2PPQ - KHSE_AGRFC -
41 HHSearch 75.6018% -22 - C2 -5IGH - ? -
55 HHSearch 73.6317% 21 - C2 -5IWU - ? -
56 HHSearch 73.5517% 17 - C2 -5UXA - ? -
42 HHSearch 73.3218% -15 - C2 -5IGI 3.7 ?
24 Fugue 73.1117% 12 - C2 -1ZYL - SRKA_ECOLI -
23 Fugue 70.1115% -3 - C2 -2Q83 3.2 COTI_BACSU
28 Fugue 69.4816% 9 - C2 -3HAM 3.0 ?
54 HHSearch 68.6018% 1 - C2 -1ND4 - KKA2_KLEPN -
49 HHSearch 67.7815% -32 - C2 -1NW1 - CKA2_CAEEL -
48 HHSearch 67.0115% -33 - C2 -1NW1 - CKA2_CAEEL -
21 Fugue 66.9316% 20 - C2 -3I1A 2.2 ?
37 HHSearch 66.4415% 16 - C- -3N4U - ? -
39 HHSearch 64.6117% -10 - C2 -3CSV 0.6 ?
27 Fugue 63.9015% 14 - C2 -2PPQ - KHSE_AGRFC -
43 HHSearch 62.8616% 25 - C2 -3TDW 4.2 ?
25 Fugue 59.6815% 7 - C2 -1J7L 4.9 KKA3_ENTFL
58 SP3 57.7015% 15 - C2 -1J7L 4.9 KKA3_ENTFL
46 HHSearch 56.2515% 24 - C2 -4R78 4.0 ?